Home Tourney Rules Question

[SossMan]

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Sorry if this is not the best forum for this but I wasn't sure where to post it.
Heads up in a raised pot after the rebuy period is over.
Flop is KQJr. PF raiser bets, PF Caller raises all-in. Call and PF raiser has AT, PF caller has A5. Turn and river don't help and she's out. While scooping the cards we notice that the turn and river cards are from the wrong deck (we use 2 decks per table).
What should we have done? By then the "correct" had the discards put back into it.

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take a deck. any deck.

take out all the 'subject cards' (the AT, the A5, and the KQJr)
shuffle the remaining 45 cards and deal a turn and a river.